Longevity & AgingResearch PaperOpen Access

Blocking Glycolysis in Human Astrocytes Dials Down Brain Inflammation

2-DG, a caloric restriction mimetic, reduces inflammatory gene expression and reshapes chromatin in human astrocytes, revealing a metabolic lever against neuroinflammation.

Sunday, May 24, 2026 0 views
Published in Sci Rep
Glowing star-shaped astrocyte cells in a blue neural network, with molecular glucose structures fading as ketone bodies appear nearby.

Summary

Researchers at UC San Diego treated human astrocytes with 2-deoxyglucose (2-DG), a glycolysis inhibitor that mimics caloric restriction, then challenged them with the inflammatory cytokine IL-1β. Using Seahorse metabolic flux analysis, RNA-sequencing, and ATAC-sequencing, they found that 2-DG reduced both oxygen consumption and extracellular acidification, blunted expression of pro-inflammatory genes TNF, IL-6, and C3, and altered chromatin accessibility at inflammation-related loci. The ketone body β-hydroxybutyrate (BHB) and glucose deprivation also suppressed cytokine expression, with additive effects when combined with 2-DG. These findings suggest that targeting astrocyte glycolysis could be a viable therapeutic strategy for neuroinflammatory diseases such as HIV-associated neurocognitive disorders and Alzheimer's disease.

Detailed Summary

Astrocytes are the brain's most abundant glial cells and play a central role in maintaining neural homeostasis. When chronically activated, they drive neuroinflammation implicated in Alzheimer's disease, HIV-associated neurocognitive disorders, Parkinson's disease, and traumatic brain injury. A key but underexplored factor is how the metabolic environment shapes astrocyte inflammatory responses—a gap this study directly addresses.

Using primary human fetal-derived astrocytes, the team tested 2-deoxyglucose (2-DG), a glucose analogue that competitively inhibits glycolysis and serves as a caloric restriction mimetic. Cells were pre-treated with 2-DG at 10, 20, or 50 mM before stimulation with IL-1β (20 ng/mL for 24 hours). Seahorse extracellular flux analysis showed that IL-1β alone modestly increased both oxygen consumption rate (OCR) and extracellular acidification rate (ECAR), reflecting a shift toward glycolytic metabolism. Adding 20 or 50 mM 2-DG significantly reversed both parameters, confirming effective glycolytic inhibition even in an inflammatory context.

RT-qPCR and RNA-sequencing confirmed that 2-DG substantially reduced IL-1β-induced upregulation of TNF, IL-6, and complement component C3—key mediators of neuroinflammatory cascades. Transcriptomic analysis revealed broad gene expression changes across immune signaling, metabolic, and structural pathways. Critically, ATAC-sequencing demonstrated that these transcriptional shifts coincided with measurable changes in chromatin accessibility, suggesting that metabolic reprogramming rewires the epigenetic landscape of astrocytes. Motif analysis of differentially accessible regions pointed to transcription factors involved in NF-κB and inflammatory signaling as likely mediators.

Parallel experiments explored whether alternative metabolic substrates could replicate these anti-inflammatory effects. Glucose deprivation alone reduced cytokine expression, and supplementation with the ketone body β-hydroxybutyrate (BHB, 30 mM)—elevated during ketogenic diets—produced similar anti-inflammatory effects. Importantly, combining BHB or glucose deprivation with 2-DG produced additive reductions in cytokine expression, suggesting complementary or synergistic mechanisms.

These results provide mechanistic support for the hypothesis that caloric restriction and ketogenic diets exert neuroprotective effects partly by reprogramming astrocyte immunometabolism at both the transcriptional and epigenetic levels. The finding that chromatin accessibility changes accompany transcriptomic shifts implies durable, potentially heritable alterations in astrocyte inflammatory tone. While the study is limited by its in vitro, single cell-line design, it lays important groundwork for investigating glycolysis-targeting strategies as adjunct therapies for neuroinflammatory diseases.

Key Findings

  • 2-DG (20–50 mM) significantly reduced IL-1β-induced OCR and ECAR, blocking the glycolytic shift in reactive astrocytes.
  • 2-DG attenuated IL-1β-driven expression of pro-inflammatory genes TNF, IL-6, and complement C3.
  • RNA-seq and ATAC-seq revealed broad transcriptomic changes linked to altered chromatin accessibility at inflammatory loci.
  • β-hydroxybutyrate and glucose deprivation independently reduced cytokine expression, with additive effects when combined with 2-DG.
  • Motif analysis implicated NF-κB pathway transcription factors as key regulators of the 2-DG-induced epigenetic changes.

Methodology

Primary human fetal-derived astrocytes were treated with IL-1β ± 2-DG (10–50 mM) for 24 hours. Metabolic phenotyping used Seahorse XFe96 extracellular flux analysis; gene expression was quantified by TaqMan RT-qPCR and bulk RNA-sequencing (DESeq2, hg38); chromatin accessibility was assessed by ATAC-sequencing with IDR replicate analysis and HOMER motif enrichment (n=3–5 biological replicates per group).

Study Limitations

All experiments were conducted in a single human fetal astrocyte cell line in vitro, limiting generalizability to adult brain astrocytes and in vivo conditions. The study does not establish causal links between specific chromatin accessibility changes and individual gene expression outcomes. Concentrations of 2-DG used (up to 50 mM) exceed physiologically achievable levels, raising questions about clinical translatability.

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